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In my limited time using it, I’ve never seen it ask for permission to read files from within the working directory, what cases have you run into where it does? Was it trying to run a read-only shell command or something?
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It will sometimes do this for gitignored files to avoid reading secret tokens in env files for example. But for certain languages that rely on code generation this can be a pain.

It seems to be particularly bad in Windows/WSL



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